Avbf_06999 protein (Armadillidium vulgare) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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co-expression

protein homology

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[Homology]

Score

Avbf_06999

Uncharacterized protein. (1115 aa)

Predicted Functional Partners:

Avbf_09366

0.709

Avbf_06866

0.661

Avbf_12009

0.661

Avbf_12010

0.661

Avbf_06858

0.659

Avbf_06867

0.659

Avbf_12818

0.506

Your Current Organism:

Armadillidium vulgare

NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Avbf_06858	Avbf_06999	A0A444SCK8	A0A444SZD0	Cyclin-J; Belongs to the cyclin family.	Uncharacterized protein.	0.659
Avbf_06866	Avbf_06999	A0A444SKY0	A0A444SZD0	Low-density lipoprotein receptor-related protein 2.	Uncharacterized protein.	0.661
Avbf_06866	Avbf_09366	A0A444SKY0	A0A444SYC8	Low-density lipoprotein receptor-related protein 2.	Uncharacterized protein.	0.650
Avbf_06867	Avbf_06999	A0A444SKY5	A0A444SZD0	Prolow-density lipoprotein receptor-related protein 1.	Uncharacterized protein.	0.659
Avbf_06867	Avbf_09366	A0A444SKY5	A0A444SYC8	Prolow-density lipoprotein receptor-related protein 1.	Uncharacterized protein.	0.648
Avbf_06999	Avbf_06858	A0A444SZD0	A0A444SCK8	Uncharacterized protein.	Cyclin-J; Belongs to the cyclin family.	0.659
Avbf_06999	Avbf_06866	A0A444SZD0	A0A444SKY0	Uncharacterized protein.	Low-density lipoprotein receptor-related protein 2.	0.661
Avbf_06999	Avbf_06867	A0A444SZD0	A0A444SKY5	Uncharacterized protein.	Prolow-density lipoprotein receptor-related protein 1.	0.659
Avbf_06999	Avbf_09366	A0A444SZD0	A0A444SYC8	Uncharacterized protein.	Uncharacterized protein.	0.709
Avbf_06999	Avbf_12009	A0A444SZD0	A0A444T7X3	Uncharacterized protein.	Low-density lipoprotein receptor-related protein 2.	0.661
Avbf_06999	Avbf_12010	A0A444SZD0	A0A444T7Z7	Uncharacterized protein.	Growth arrest-specific protein 6.	0.661
Avbf_06999	Avbf_12818	A0A444SZD0	A0A444SIL5	Uncharacterized protein.	Uncharacterized protein.	0.506
Avbf_09366	Avbf_06866	A0A444SYC8	A0A444SKY0	Uncharacterized protein.	Low-density lipoprotein receptor-related protein 2.	0.650
Avbf_09366	Avbf_06867	A0A444SYC8	A0A444SKY5	Uncharacterized protein.	Prolow-density lipoprotein receptor-related protein 1.	0.648
Avbf_09366	Avbf_06999	A0A444SYC8	A0A444SZD0	Uncharacterized protein.	Uncharacterized protein.	0.709
Avbf_09366	Avbf_12009	A0A444SYC8	A0A444T7X3	Uncharacterized protein.	Low-density lipoprotein receptor-related protein 2.	0.650
Avbf_09366	Avbf_12010	A0A444SYC8	A0A444T7Z7	Uncharacterized protein.	Growth arrest-specific protein 6.	0.650
Avbf_12009	Avbf_06999	A0A444T7X3	A0A444SZD0	Low-density lipoprotein receptor-related protein 2.	Uncharacterized protein.	0.661
Avbf_12009	Avbf_09366	A0A444T7X3	A0A444SYC8	Low-density lipoprotein receptor-related protein 2.	Uncharacterized protein.	0.650
Avbf_12010	Avbf_06999	A0A444T7Z7	A0A444SZD0	Growth arrest-specific protein 6.	Uncharacterized protein.	0.661

page 1 of 2

Network Stats

number of nodes:

11

number of edges:

22

average node degree:

4

avg. local clustering coefficient:

0.83

expected number of edges:

15

PPI enrichment p-value:

0.0417

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

11 of 114

1.55

3.35

2.24e-14

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

9 of 55

1.78

4.0

1.47e-12

GO:0019843

rRNA binding

7 of 42

1.78

3.3

2.02e-09

GO:0003723

RNA binding

8 of 121

1.38

2.08

2.56e-08

GO:0000049

tRNA binding

4 of 28

1.72

1.74

0.00013

GO:0003676

Nucleic acid binding

9 of 504

0.81

0.76

5.43e-05

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

9 of 63

1.72

3.82

8.73e-13

GO:0015935

Small ribosomal subunit

3 of 6

2.26

2.33

3.03e-05

GO:0005622

Intracellular anatomical structure

11 of 1355

0.47

0.41

0.00014

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:23342046

(2013) The genome sequences of Cellulomonas fimi and Cellvibrio gilvus reveal the cellulolytic strategies of two facultative anaerobes, transfer of Cellvibrio gilvus to the genus Cellulomonas, and proposal of Cellulomonas gilvus sp. nov.

3 of 32

1.53

0.95

0.0091

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:162

Ribosome

9 of 43

1.88

4.66

9.85e-14

CL:166

rRNA-binding

7 of 28

1.96

4.23

3.68e-11

CL:169

rRNA-binding

5 of 15

2.08

3.46

3.66e-08

CL:133

Translation, and Protein export

11 of 136

1.47

2.97

9.85e-14

CL:173

mRNA binding, and rRNA-binding

3 of 6

2.26

2.21

5.49e-05

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

sde03010

Ribosome

9 of 53

1.79

4.26

1.58e-13

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

7 of 52

1.69

2.92

9.28e-09

GOCC:0022626

Cytosolic ribosome

5 of 29

1.8

2.55

1.03e-06

GOCC:0044391

Ribosomal subunit

5 of 33

1.74

2.44

1.23e-06

GOCC:0022627

Cytosolic small ribosomal subunit

3 of 13

1.92

1.77

0.00024

GOCC:0043229

Intracellular organelle

9 of 280

1.07

1.29

3.19e-07

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

9 of 55

1.78

4.11

4.44e-13

KW-0699

rRNA-binding

7 of 39

1.82

3.57

3.82e-10

KW-0820

tRNA-binding

3 of 19

1.76

1.43

0.0010

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