STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avbf_06511Telomerase-binding protein EST1A. (318 aa)    
Predicted Functional Partners:
Avbf_02301
Regulator of nonsense transcripts 1.
   
 0.977
Avbf_16101
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.957
Avbf_10400
Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.
   
 
 0.947
Avbf_01032
Uncharacterized protein.
   
 0.933
Avbf_01030
Serine/threonine-protein kinase SMG1.
   
 0.933
Avbf_14283
Protein SMG5.
   
 0.887
Avbf_02861
X-ray repair cross-complementing protein 5.
    
 
 0.859
Avbf_11753
Uncharacterized protein.
    
 
 0.846
Avbf_04281
Regulator of nonsense transcripts 2.
   
 0.846
Avbf_10844
X-ray repair cross-complementing protein 5.
    
 
 0.846
Your Current Organism:
Armadillidium vulgare
NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.