Avbf_19190 protein (Armadillidium vulgare) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Avbf_19190

Hexosyltransferase. (346 aa)

Predicted Functional Partners:

Avbf_12044

0.816

Avbf_08563

0.802

Avbf_03061

0.653

Avbf_01786

0.615

Avbf_15023

0.608

Avbf_04277

0.608

Avbf_04618

0.608

Avbf_04620

0.608

Avbf_05518

0.597

Avbf_17894

0.595

Your Current Organism:

Armadillidium vulgare

NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Avbf_01786	Avbf_03061	A0A444THV8	A0A444TS84	EGF domain-specific O-linked N-acetylglucosamine transferase.	Dystroglycan.	0.984
Avbf_01786	Avbf_19190	A0A444THV8	A0A444T0Z6	EGF domain-specific O-linked N-acetylglucosamine transferase.	Hexosyltransferase.	0.615
Avbf_03061	Avbf_01786	A0A444TS84	A0A444THV8	Dystroglycan.	EGF domain-specific O-linked N-acetylglucosamine transferase.	0.984
Avbf_03061	Avbf_19190	A0A444TS84	A0A444T0Z6	Dystroglycan.	Hexosyltransferase.	0.653
Avbf_04277	Avbf_19190	A0A444TQG0	A0A444T0Z6	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1.	Hexosyltransferase.	0.608
Avbf_04618	Avbf_19190	A0A444TS77	A0A444T0Z6	Uncharacterized protein.	Hexosyltransferase.	0.608
Avbf_04620	Avbf_19190	A0A444TSF8	A0A444T0Z6	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1.	Hexosyltransferase.	0.608
Avbf_05518	Avbf_08563	A0A444TG38	A0A444SW54	L-Fucosyltransferase; Belongs to the glycosyltransferase 11 family.	Beta-1,4-N-acetylgalactosaminyltransferase bre-4.	0.914
Avbf_05518	Avbf_12044	A0A444TG38	A0A444T5Z4	L-Fucosyltransferase; Belongs to the glycosyltransferase 11 family.	Beta-1,4-N-acetylgalactosaminyltransferase bre-4.	0.915
Avbf_05518	Avbf_19190	A0A444TG38	A0A444T0Z6	L-Fucosyltransferase; Belongs to the glycosyltransferase 11 family.	Hexosyltransferase.	0.597
Avbf_08563	Avbf_05518	A0A444SW54	A0A444TG38	Beta-1,4-N-acetylgalactosaminyltransferase bre-4.	L-Fucosyltransferase; Belongs to the glycosyltransferase 11 family.	0.914
Avbf_08563	Avbf_12044	A0A444SW54	A0A444T5Z4	Beta-1,4-N-acetylgalactosaminyltransferase bre-4.	Beta-1,4-N-acetylgalactosaminyltransferase bre-4.	0.910
Avbf_08563	Avbf_17894	A0A444SW54	A0A444SII1	Beta-1,4-N-acetylgalactosaminyltransferase bre-4.	Lactosylceramide 4-alpha-galactosyltransferase.	0.682
Avbf_08563	Avbf_19190	A0A444SW54	A0A444T0Z6	Beta-1,4-N-acetylgalactosaminyltransferase bre-4.	Hexosyltransferase.	0.802
Avbf_12044	Avbf_05518	A0A444T5Z4	A0A444TG38	Beta-1,4-N-acetylgalactosaminyltransferase bre-4.	L-Fucosyltransferase; Belongs to the glycosyltransferase 11 family.	0.915
Avbf_12044	Avbf_08563	A0A444T5Z4	A0A444SW54	Beta-1,4-N-acetylgalactosaminyltransferase bre-4.	Beta-1,4-N-acetylgalactosaminyltransferase bre-4.	0.910
Avbf_12044	Avbf_17894	A0A444T5Z4	A0A444SII1	Beta-1,4-N-acetylgalactosaminyltransferase bre-4.	Lactosylceramide 4-alpha-galactosyltransferase.	0.693
Avbf_12044	Avbf_19190	A0A444T5Z4	A0A444T0Z6	Beta-1,4-N-acetylgalactosaminyltransferase bre-4.	Hexosyltransferase.	0.816
Avbf_15023	Avbf_19190	A0A444T911	A0A444T0Z6	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1.	Hexosyltransferase.	0.608
Avbf_17894	Avbf_08563	A0A444SII1	A0A444SW54	Lactosylceramide 4-alpha-galactosyltransferase.	Beta-1,4-N-acetylgalactosaminyltransferase bre-4.	0.682