STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avbf_09588SRP40_C domain-containing protein. (1026 aa)    
Predicted Functional Partners:
Avbf_06500
Nucleolar protein 56.
   
 
 0.998
Avbf_14506
Protein regulator of cytokinesis 1.
   
 
 0.995
Avbf_08190
Nucleolar protein 58.
   
 
 0.985
Avbf_14466
Nucleolar protein 58.
   
 
 0.985
Avbf_03770
CCAAT/enhancer-binding protein zeta.
   
   0.967
Avbf_03285
Uncharacterized protein.
   
 
 0.967
Avbf_11075
Suppressor of SWI4 1-like protein.
   
   0.955
Avbf_07702
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
   0.953
Avbf_05788
Protein LTV1-like protein.
   
    0.947
Avbf_06215
ATP-dependent RNA helicase dbp9.
   
 
 0.935
Your Current Organism:
Armadillidium vulgare
NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.