Avbf_12413 protein (Armadillidium vulgare) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Avbf_12413

Uncharacterized protein. (104 aa)

Predicted Functional Partners:

Avbf_11365

0.879

Avbf_05005

0.879

Avbf_03533

0.748

Avbf_05961

0.689

Avbf_01845

0.621

Avbf_03736

0.618

Avbf_06054

0.617

Avbf_01176

0.615

Avbf_01697

0.609

Avbf_09182

0.600

Your Current Organism:

Armadillidium vulgare

NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Avbf_01176	Avbf_01697	A0A444TMJ7	A0A444TSA7	28S ribosomal protein S28, mitochondrial.	Putative 28S ribosomal protein S16, mitochondrial.	0.998
Avbf_01176	Avbf_03533	A0A444TMJ7	A0A444TVT0	28S ribosomal protein S28, mitochondrial.	Putative ATP-dependent RNA helicase DHX34.	0.981
Avbf_01176	Avbf_03736	A0A444TMJ7	A0A444TB53	28S ribosomal protein S28, mitochondrial.	28S ribosomal protein S2, mitochondrial.	0.995
Avbf_01176	Avbf_06054	A0A444TMJ7	A0A444T2K4	28S ribosomal protein S28, mitochondrial.	28S ribosomal protein S9, mitochondrial.	0.996
Avbf_01176	Avbf_12413	A0A444TMJ7	A0A444T5V4	28S ribosomal protein S28, mitochondrial.	Uncharacterized protein.	0.615
Avbf_01697	Avbf_01176	A0A444TSA7	A0A444TMJ7	Putative 28S ribosomal protein S16, mitochondrial.	28S ribosomal protein S28, mitochondrial.	0.998
Avbf_01697	Avbf_03533	A0A444TSA7	A0A444TVT0	Putative 28S ribosomal protein S16, mitochondrial.	Putative ATP-dependent RNA helicase DHX34.	0.997
Avbf_01697	Avbf_03736	A0A444TSA7	A0A444TB53	Putative 28S ribosomal protein S16, mitochondrial.	28S ribosomal protein S2, mitochondrial.	0.999
Avbf_01697	Avbf_06054	A0A444TSA7	A0A444T2K4	Putative 28S ribosomal protein S16, mitochondrial.	28S ribosomal protein S9, mitochondrial.	0.999
Avbf_01697	Avbf_12413	A0A444TSA7	A0A444T5V4	Putative 28S ribosomal protein S16, mitochondrial.	Uncharacterized protein.	0.609
Avbf_01845	Avbf_05005	A0A444TDW9	A0A444T6M5	CAVP-target protein.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.999
Avbf_01845	Avbf_11365	A0A444TDW9	A0A444SDQ9	CAVP-target protein.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.999
Avbf_01845	Avbf_12413	A0A444TDW9	A0A444T5V4	CAVP-target protein.	Uncharacterized protein.	0.621
Avbf_03533	Avbf_01176	A0A444TVT0	A0A444TMJ7	Putative ATP-dependent RNA helicase DHX34.	28S ribosomal protein S28, mitochondrial.	0.981
Avbf_03533	Avbf_01697	A0A444TVT0	A0A444TSA7	Putative ATP-dependent RNA helicase DHX34.	Putative 28S ribosomal protein S16, mitochondrial.	0.997
Avbf_03533	Avbf_03736	A0A444TVT0	A0A444TB53	Putative ATP-dependent RNA helicase DHX34.	28S ribosomal protein S2, mitochondrial.	0.997
Avbf_03533	Avbf_05005	A0A444TVT0	A0A444T6M5	Putative ATP-dependent RNA helicase DHX34.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.970
Avbf_03533	Avbf_06054	A0A444TVT0	A0A444T2K4	Putative ATP-dependent RNA helicase DHX34.	28S ribosomal protein S9, mitochondrial.	0.997
Avbf_03533	Avbf_11365	A0A444TVT0	A0A444SDQ9	Putative ATP-dependent RNA helicase DHX34.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.970
Avbf_03533	Avbf_12413	A0A444TVT0	A0A444T5V4	Putative ATP-dependent RNA helicase DHX34.	Uncharacterized protein.	0.748

page 1 of 3

Network Stats

number of nodes:

11

number of edges:

13

average node degree:

2.36

avg. local clustering coefficient:

0.885

expected number of edges:

10

PPI enrichment p-value:

0.233

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0046907

Intracellular transport

5 of 521

1.35

0.95

0.0054

GO:0006886

Intracellular protein transport

4 of 319

1.46

0.92

0.0092

GO:0015031

Protein transport

5 of 823

1.15

0.74

0.0124

GO:0006606

Protein import into nucleus

2 of 40

2.06

0.74

0.0427

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0043227

Membrane-bounded organelle

11 of 7441

0.54

0.43

0.0011

GO:0043229

Intracellular organelle

11 of 7650

0.52

0.42

0.0011

GO:0005737

Cytoplasm

10 of 6797

0.53

0.41

0.0031

GO:0043231

Intracellular membrane-bounded organelle

10 of 6999

0.52

0.4

0.0033

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:3521

LAG1, DNA binding, and Protein of unknown function DUF6699

2 of 5

2.97

1.61

0.0012

CL:2008

Mixed, incl. Exportin-1/5, and Zinc finger, RanBP2-type

2 of 5

2.97

1.61

0.0012

CL:1954

Nuclear pore

3 of 32

2.34

1.58

0.0011

CL:15982

Mostly uncharacterized, incl. Serine-type endopeptidase activity, and Multifunctional anion exchangers

3 of 145

1.68

1.17

0.0035

CL:16106

Mixed, incl. Multifunctional anion exchangers, and Tyrosine/serine-protein phosphatase IphP-type

2 of 34

2.14

1.1

0.0085

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-68875

Mitotic Prophase

3 of 53

2.12

1.62

0.00076

MAP-68886

M Phase

4 of 175

1.72

1.47

0.00070

MAP-2980766

Nuclear Envelope Breakdown

2 of 26

2.25

0.92

0.0198

MAP-69278

Cell Cycle, Mitotic

4 of 630

1.17

0.66

0.0253

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR040159

Suppressor of hairless-like

2 of 2

3.37

1.39

0.0032

IPR037095

RBP-J/Cbf11, DNA binding domain superfamily

2 of 2

3.37

1.39

0.0032

IPR036358

Beta-trefoil domain superfamily

2 of 2

3.37

1.39

0.0032

IPR015351

RBP-J/Cbf11/Cbf12, DNA binding

2 of 2

3.37

1.39

0.0032

IPR015350

Beta-trefoil DNA-binding domain

2 of 2

3.37

1.39

0.0032

(more ...)

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM01268

Beta-trefoil DNA-binding domain

2 of 2

3.37

1.93

0.00034

SM01267

LAG1, DNA binding

2 of 2

3.37

1.93

0.00034

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About