STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avbf_14475Mitochondrial ribonuclease P protein 1-like protein. (300 aa)    
Predicted Functional Partners:
Avbf_15347
B(0,+)-type amino acid transporter 1; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.916
Avbf_17924
3-hydroxyacyl-CoA dehydrogenase type-2; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.916
Avbf_16312
3-hydroxyacyl-CoA dehydrogenase type-2; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.916
Avbf_04839
3-hydroxyacyl-CoA dehydrogenase type-2.
    
 0.916
Avbf_13190
3-hydroxyacyl-CoA dehydrogenase type-2; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.916
Avbf_07847
28S ribosomal protein S31, mitochondrial.
   
 
 0.774
Avbf_00873
Uncharacterized protein.
   
   0.731
Avbf_06947
28S ribosomal protein S18b, mitochondrial.
   
   0.706
Avbf_01176
28S ribosomal protein S28, mitochondrial.
    
   0.705
Avbf_01697
Putative 28S ribosomal protein S16, mitochondrial.
    
 
 0.703
Your Current Organism:
Armadillidium vulgare
NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug
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