STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avbf_15435WD repeat, SAM and U-box domain-containing protein 1. (537 aa)    
Predicted Functional Partners:
Avbf_01532
RNA polymerase-associated protein LEO1.
    
 0.997
Avbf_09005
Helicase SKI2W.
    
 0.972
Avbf_13876
Parafibromin.
    
 0.960
Avbf_06270
RNA polymerase II-associated factor 1-like protein.
   
 0.953
Avbf_02836
Importin-7.
    
 0.946
Avbf_13160
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.942
Avbf_08305
Cytochrome c; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
   
 0.924
Avbf_08306
Cytochrome c; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
   
 0.924
Avbf_15568
DNA excision repair protein ERCC-8.
    
 0.918
Avbf_04691
DNA-directed RNA polymerase II subunit RPB3.
    
 0.895
Your Current Organism:
Armadillidium vulgare
NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.