STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avbf_01206Basement membrane-specific heparan sulfate proteoglycan core protein. (321 aa)    
Predicted Functional Partners:
Avbf_07381
Axin-1.
    
 0.922
Avbf_10870
Low-density lipoprotein receptor.
 
      0.900
Avbf_17195
Low-density lipoprotein receptor-related protein 2.
 
     
0.898
Avbf_05228
Agrin.
 
  
 0.896
Avbf_14022
Reelin.
    
 0.892
Avbf_13923
Reelin.
    
 0.892
Avbf_06865
Pro-epidermal growth factor.
 
      0.891
Avbf_09064
Low-density lipoprotein receptor-related protein 5.
 
      0.883
Avbf_13542
Basement membrane proteoglycan.
    
 0.881
Avbf_01579
Basement membrane-specific heparan sulfate proteoglycan core protein.
    
 0.881
Your Current Organism:
Armadillidium vulgare
NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.