STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avbf_04311Lariat debranching enzyme. (476 aa)    
Predicted Functional Partners:
Avbf_13455
CWF19-like protein 1.
   
 
 0.914
Avbf_07702
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
    
 
 0.660
Avbf_04745
MOB kinase activator-like 3.
 
      0.633
Avbf_07990
Exportin-5.
   
  
 0.573
Avbf_09858
Pre-mRNA-splicing factor 18.
    
 
 0.571
Avbf_03477
MOB kinase activator-like 1.
 
      0.531
Avbf_01860
Peptidylprolyl isomerase.
      
 0.529
Avbf_08224
Ribonuclease 3.
   
  
 0.521
Avbf_06557
U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.
      
 0.516
Avbf_04601
CWF19-like protein 2.
   
  
 0.510
Your Current Organism:
Armadillidium vulgare
NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.