Avbf_04832 protein (Armadillidium vulgare) - STRING interaction network

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second shell of interactors

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a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

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Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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co-expression

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Score

Avbf_04832

Graves disease carrier protein-like; Belongs to the mitochondrial carrier (TC 2.A.29) family. (300 aa)

Predicted Functional Partners:

Avbf_00710

0.958

Avbf_13160

0.948

Avbf_14524

0.903

Avbf_06417

0.894

Avbf_08880

0.887

Avbf_17159

0.884

Avbf_11248

0.877

Avbf_14858

0.874

Avbf_05703

0.873

Avbf_11554

0.871

Your Current Organism:

Armadillidium vulgare

NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Avbf_00710	Avbf_04832	A0A444SVJ8	A0A444TI87	60S ribosomal protein L18.	Graves disease carrier protein-like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.958
Avbf_00710	Avbf_05703	A0A444SVJ8	A0A444TJC7	60S ribosomal protein L18.	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.999
Avbf_00710	Avbf_06417	A0A444SVJ8	A0A444SZQ3	60S ribosomal protein L18.	60S ribosomal protein L27.	0.999
Avbf_00710	Avbf_08880	A0A444SVJ8	A0A444T5A9	60S ribosomal protein L18.	40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	0.999
Avbf_00710	Avbf_11248	A0A444SVJ8	A0A444TKV7	60S ribosomal protein L18.	60S ribosomal protein L28.	0.999
Avbf_00710	Avbf_11554	A0A444SVJ8	A0A444SHH5	60S ribosomal protein L18.	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.999
Avbf_00710	Avbf_13160	A0A444SVJ8	A0A444SK24	60S ribosomal protein L18.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
Avbf_00710	Avbf_14524	A0A444SVJ8	A0A444T3V9	60S ribosomal protein L18.	60S ribosomal protein L14.	0.999
Avbf_00710	Avbf_14858	A0A444SVJ8	A0A444SVL7	60S ribosomal protein L18.	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.999
Avbf_00710	Avbf_17159	A0A444SVJ8	A0A444SLN0	60S ribosomal protein L18.	60S ribosomal protein L8.	0.999
Avbf_04832	Avbf_00710	A0A444TI87	A0A444SVJ8	Graves disease carrier protein-like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	60S ribosomal protein L18.	0.958
Avbf_04832	Avbf_05703	A0A444TI87	A0A444TJC7	Graves disease carrier protein-like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.873
Avbf_04832	Avbf_06417	A0A444TI87	A0A444SZQ3	Graves disease carrier protein-like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	60S ribosomal protein L27.	0.894
Avbf_04832	Avbf_08880	A0A444TI87	A0A444T5A9	Graves disease carrier protein-like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	0.887
Avbf_04832	Avbf_11248	A0A444TI87	A0A444TKV7	Graves disease carrier protein-like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	60S ribosomal protein L28.	0.877
Avbf_04832	Avbf_11554	A0A444TI87	A0A444SHH5	Graves disease carrier protein-like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.871
Avbf_04832	Avbf_13160	A0A444TI87	A0A444SK24	Graves disease carrier protein-like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.948
Avbf_04832	Avbf_14524	A0A444TI87	A0A444T3V9	Graves disease carrier protein-like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	60S ribosomal protein L14.	0.903
Avbf_04832	Avbf_14858	A0A444TI87	A0A444SVL7	Graves disease carrier protein-like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.874
Avbf_04832	Avbf_17159	A0A444TI87	A0A444SLN0	Graves disease carrier protein-like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	60S ribosomal protein L8.	0.884

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Network Stats

number of nodes:

5

number of edges:

5

average node degree:

2

avg. local clustering coefficient:

0.833

expected number of edges:

4

PPI enrichment p-value:

0.373

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0000398

mRNA splicing, via spliceosome

11 of 163

2.15

7.56

1.66e-20

GO:0000245

Spliceosomal complex assembly

3 of 22

2.45

2.33

4.10e-05

GO:0022618

Ribonucleoprotein complex assembly

4 of 118

1.85

2.0

5.10e-05

GO:0000393

Spliceosomal conformational changes to generate catalytic conformation

2 of 6

2.84

1.63

0.0011

GO:0033120

Positive regulation of RNA splicing

2 of 13

2.51

1.31

0.0039

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003723

RNA binding

6 of 801

1.19

1.0

0.0014

GO:0003676

Nucleic acid binding

7 of 2023

0.86

0.59

0.0095

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0000974

Prp19 complex

7 of 10

3.16

9.4

3.14e-18

GO:0071013

Catalytic step 2 spliceosome

9 of 70

2.43

8.21

1.13e-18

GO:0005681

Spliceosomal complex

11 of 160

2.16

7.8

2.77e-21

GO:0071007

U2-type catalytic step 2 spliceosome

6 of 12

3.02

7.57

6.86e-15

GO:0071014

post-mRNA release spliceosomal complex

4 of 9

2.97

4.69

2.21e-09

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:9007

Mixed, incl. post-mRNA release spliceosomal complex, and Catalytic step 1 spliceosome

9 of 26

2.86

10.79

6.37e-22

CL:9040

Prp19 complex, and AAA domain

7 of 7

3.32

9.95

4.53e-19

CL:8855

Spliceosomal complex

11 of 119

2.29

8.79

2.99e-22

CL:9013

Mixed, incl. Catalytic step 1 spliceosome, and Domain in DAP-5, eIF4G, MA-3 and other proteins.

2 of 6

2.84

1.57

0.0014

CL:8966

Prp19 complex

2 of 6

2.84

1.57

0.0014

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03040

Spliceosome

11 of 184

2.1

7.48

1.94e-21

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-72163

mRNA Splicing - Major Pathway

11 of 209

2.04

6.81

6.15e-20

MAP-72172

mRNA Splicing

11 of 220

2.02

6.68

6.15e-20

MAP-72203

Processing of Capped Intron-Containing Pre-mRNA

11 of 297

1.89

5.7

8.93e-19

MAP-8953854

Metabolism of RNA

11 of 729

1.5

3.17

1.15e-14

MAP-6781823

Formation of TC-NER Pre-Incision Complex

4 of 71

2.07

2.48

8.59e-06

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0000974

Prp19 complex

7 of 10

3.16

9.14

1.00e-17

GOCC:0005681

Spliceosomal complex

9 of 90

2.32

7.49

1.01e-17

GOCC:0071013

Catalytic step 2 spliceosome

6 of 22

2.75

6.52

2.96e-13

GOCC:0071007

U2-type catalytic step 2 spliceosome

4 of 7

3.08

4.75

1.95e-09

GOCC:0032991

Protein-containing complex

11 of 2601

0.95

1.13

7.04e-09

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR045075

Pre-mRNA-splicing factor Syf1-like

2 of 3

3.14

1.15

0.0085

IPR003107

HAT (Half-A-TPR) repeat

2 of 11

2.58

0.81

0.0333

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00386

HAT (Half-A-TPR) repeats

2 of 11

2.58

1.14

0.0085

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