Avbf_01301 protein (Armadillidium vulgare) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Avbf_01301

Pre-mRNA-splicing factor CWC22-like protein. (814 aa)

Predicted Functional Partners:

Avbf_11253

0.998

Avbf_12728

0.998

Avbf_04140

0.997

Avbf_03010

0.996

Avbf_14413

0.995

Avbf_15470

0.995

Avbf_02597

0.995

Avbf_00982

0.995

Avbf_11254

0.994

Avbf_06451

0.994

Your Current Organism:

Armadillidium vulgare

NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Avbf_00982	Avbf_01301	A0A444TSA3	A0A444TIE3	Uncharacterized protein.	Pre-mRNA-splicing factor CWC22-like protein.	0.995
Avbf_00982	Avbf_02597	A0A444TSA3	A0A444TLF1	Uncharacterized protein.	Crooked neck-like protein 1.	0.980
Avbf_00982	Avbf_03010	A0A444TSA3	A0A444TL39	Uncharacterized protein.	Coiled-coil domain-containing protein 94.	0.991
Avbf_00982	Avbf_04140	A0A444TSA3	A0A444SI07	Uncharacterized protein.	Eukaryotic initiation factor 4A-III.	0.970
Avbf_00982	Avbf_06451	A0A444TSA3	A0A444TT82	Uncharacterized protein.	RING finger protein.	0.970
Avbf_00982	Avbf_11253	A0A444TSA3	A0A444SX49	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.981
Avbf_00982	Avbf_11254	A0A444TSA3	A0A444SX76	Uncharacterized protein.	Uncharacterized protein.	0.951
Avbf_00982	Avbf_12728	A0A444TSA3	A0A444T6Y0	Uncharacterized protein.	Pre-mRNA-processing factor 17.	0.997
Avbf_00982	Avbf_14413	A0A444TSA3	A0A444SG17	Uncharacterized protein.	Pre-mRNA-splicing factor SYF1.	0.968
Avbf_00982	Avbf_15470	A0A444TSA3	A0A444T433	Uncharacterized protein.	Pre-mRNA-splicing factor Syf2.	0.994
Avbf_01301	Avbf_00982	A0A444TIE3	A0A444TSA3	Pre-mRNA-splicing factor CWC22-like protein.	Uncharacterized protein.	0.995
Avbf_01301	Avbf_02597	A0A444TIE3	A0A444TLF1	Pre-mRNA-splicing factor CWC22-like protein.	Crooked neck-like protein 1.	0.995
Avbf_01301	Avbf_03010	A0A444TIE3	A0A444TL39	Pre-mRNA-splicing factor CWC22-like protein.	Coiled-coil domain-containing protein 94.	0.996
Avbf_01301	Avbf_04140	A0A444TIE3	A0A444SI07	Pre-mRNA-splicing factor CWC22-like protein.	Eukaryotic initiation factor 4A-III.	0.997
Avbf_01301	Avbf_06451	A0A444TIE3	A0A444TT82	Pre-mRNA-splicing factor CWC22-like protein.	RING finger protein.	0.994
Avbf_01301	Avbf_11253	A0A444TIE3	A0A444SX49	Pre-mRNA-splicing factor CWC22-like protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.998
Avbf_01301	Avbf_11254	A0A444TIE3	A0A444SX76	Pre-mRNA-splicing factor CWC22-like protein.	Uncharacterized protein.	0.994
Avbf_01301	Avbf_12728	A0A444TIE3	A0A444T6Y0	Pre-mRNA-splicing factor CWC22-like protein.	Pre-mRNA-processing factor 17.	0.998
Avbf_01301	Avbf_14413	A0A444TIE3	A0A444SG17	Pre-mRNA-splicing factor CWC22-like protein.	Pre-mRNA-splicing factor SYF1.	0.995
Avbf_01301	Avbf_15470	A0A444TIE3	A0A444T433	Pre-mRNA-splicing factor CWC22-like protein.	Pre-mRNA-splicing factor Syf2.	0.995