Avbf_06296 protein (Armadillidium vulgare) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Avbf_06296

Immunoglobulin superfamily member 10. (474 aa)

Predicted Functional Partners:

Avbf_00027

0.982

Avbf_01307

0.957

Avbf_11365

0.936

Avbf_05005

0.936

Avbf_03530

0.909

Avbf_07574

0.903

Avbf_00173

0.903

Avbf_00174

0.903

Avbf_02663

0.881

Avbf_00045

0.773

Your Current Organism:

Armadillidium vulgare

NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Avbf_00027	Avbf_00045	A0A444TT44	A0A444TFB7	Protein slit.	Myosin light chain kinase, smooth muscle.	0.816
Avbf_00027	Avbf_00173	A0A444TT44	A0A444TQD0	Protein slit.	Uncharacterized protein.	0.798
Avbf_00027	Avbf_00174	A0A444TT44	A0A444TQD3	Protein slit.	Neogenin.	0.798
Avbf_00027	Avbf_03530	A0A444TT44	A0A444TVS8	Protein slit.	Protein enabled-like protein.	0.791
Avbf_00027	Avbf_05005	A0A444TT44	A0A444T6M5	Protein slit.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.905
Avbf_00027	Avbf_06296	A0A444TT44	A0A444TIJ7	Protein slit.	Immunoglobulin superfamily member 10.	0.982
Avbf_00027	Avbf_07574	A0A444TT44	A0A444SYA1	Protein slit.	Tyrosine-protein kinase Abl.	0.941
Avbf_00027	Avbf_11365	A0A444TT44	A0A444SDQ9	Protein slit.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.905
Avbf_00045	Avbf_00027	A0A444TFB7	A0A444TT44	Myosin light chain kinase, smooth muscle.	Protein slit.	0.816
Avbf_00045	Avbf_01307	A0A444TFB7	A0A444TPF4	Myosin light chain kinase, smooth muscle.	Slit-like protein 3 protein.	0.816
Avbf_00045	Avbf_03530	A0A444TFB7	A0A444TVS8	Myosin light chain kinase, smooth muscle.	Protein enabled-like protein.	0.686
Avbf_00045	Avbf_05005	A0A444TFB7	A0A444T6M5	Myosin light chain kinase, smooth muscle.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.997
Avbf_00045	Avbf_06296	A0A444TFB7	A0A444TIJ7	Myosin light chain kinase, smooth muscle.	Immunoglobulin superfamily member 10.	0.773
Avbf_00045	Avbf_07574	A0A444TFB7	A0A444SYA1	Myosin light chain kinase, smooth muscle.	Tyrosine-protein kinase Abl.	0.692
Avbf_00045	Avbf_11365	A0A444TFB7	A0A444SDQ9	Myosin light chain kinase, smooth muscle.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.997
Avbf_00173	Avbf_00027	A0A444TQD0	A0A444TT44	Uncharacterized protein.	Protein slit.	0.798
Avbf_00173	Avbf_01307	A0A444TQD0	A0A444TPF4	Uncharacterized protein.	Slit-like protein 3 protein.	0.707
Avbf_00173	Avbf_03530	A0A444TQD0	A0A444TVS8	Uncharacterized protein.	Protein enabled-like protein.	0.494
Avbf_00173	Avbf_05005	A0A444TQD0	A0A444T6M5	Uncharacterized protein.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.728
Avbf_00173	Avbf_06296	A0A444TQD0	A0A444TIJ7	Uncharacterized protein.	Immunoglobulin superfamily member 10.	0.903

page 1 of 5

Network Stats

number of nodes:

8

number of edges:

14

average node degree:

3.5

avg. local clustering coefficient:

0.917

expected number of edges:

11

PPI enrichment p-value:

0.206

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006811

Ion transport

8 of 221

1.31

1.75

4.92e-07

GO:0071702

Organic substance transport

6 of 168

1.3

1.42

4.63e-05

GO:0055085

Transmembrane transport

7 of 468

0.92

0.81

0.00047

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0015420

ABC-type vitamin B12 transporter activity

5 of 21

2.13

3.15

2.79e-07

GO:0015288

Porin activity

5 of 65

1.64

2.02

9.92e-06

GO:0022857

Transmembrane transporter activity

8 of 492

0.96

0.97

2.30e-05

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0046930

Pore complex

5 of 20

2.15

3.83

6.91e-09

GO:0009279

Cell outer membrane

9 of 219

1.36

2.22

7.15e-10

GO:0016021

Integral component of membrane

8 of 1200

0.57

0.44

0.0025

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4162

Mixed, incl. TonB-dependent outer membrane protein, SusC/RagA, and SusD family

9 of 153

1.52

2.73

3.33e-10

CL:4163

Mixed, incl. TonB-dependent outer membrane protein, SusC/RagA, and SusD family

8 of 145

1.49

2.45

6.18e-09

CL:4437

Mixed, incl. Zinc-binding dehydrogenase, and Metallopeptidase, catalytic domain superfamily

3 of 8

2.32

1.96

0.00019

CL:4165

TonB-dependent outer membrane protein SusC/RagA, conserved site, and SusD family

5 of 118

1.38

1.34

0.00027

CL:4166

TonB-dependent outer membrane protein SusC/RagA, conserved site, and SusD family

4 of 113

1.3

0.92

0.0055

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map02020

Two-component system

8 of 788

0.76

0.61

0.0011

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0019867

Outer membrane

9 of 228

1.35

2.11

2.56e-09

GOCC:0009279

Cell outer membrane

6 of 189

1.25

1.33

5.99e-05

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-1134

Transmembrane beta strand

8 of 83

1.73

3.53

5.37e-11

KW-0998

Cell outer membrane

8 of 100

1.65

3.22

1.10e-10

KW-0798

TonB box

8 of 100

1.65

3.22

1.10e-10

KW-0675

Receptor

8 of 122

1.57

2.89

2.52e-10

KW-0732

Signal

9 of 932

0.73

0.66

7.29e-05

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00593

TonB dependent receptor

8 of 86

1.72

3.34

2.51e-10

PF07715

TonB-dependent Receptor Plug Domain

8 of 109

1.62

2.95

7.61e-10

PF13715

CarboxypepD_reg-like domain

8 of 110

1.61

2.94

7.61e-10

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR023996

TonB-dependent outer membrane protein, SusC/RagA

8 of 63

1.85

3.89

5.82e-11

IPR023997

TonB-dependent outer membrane protein SusC/RagA, conserved site

7 of 59

1.82

3.42

1.64e-09

IPR000531

TonB-dependent receptor-like, beta-barrel

8 of 87

1.71

3.3

3.29e-10

IPR012910

TonB-dependent receptor, plug domain

8 of 112

1.6

2.86

1.50e-09

IPR037066

TonB-dependent receptor, plug domain superfamily

8 of 120

1.57

2.77

1.64e-09

(more ...)

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (16%) [HD]

Permalink

Credits

Access

Info

About

STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About