STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avbf_05705Transcription factor SPT20-like protein. (803 aa)    
Predicted Functional Partners:
Avbf_16232
SGF29 C-terminal domain-containing protein.
    
 0.997
Avbf_05088
Transcription initiation factor TFIID subunit 9.
    
 0.995
Avbf_01286
Transcriptional adapter 3.
    
 0.994
Avbf_01655
TAF5-like RNA polymerase II factor-associated factor 65 kDa subunit 5L.
    
 0.994
Avbf_08320
TAF6-like RNA polymerase II factor-associated factor 65 kDa subunit 6L.
    
 0.993
Avbf_04137
Transcriptional adapter 1.
    
 0.993
Avbf_07326
STAGA complex 65 subunit gamma.
    
 0.992
Avbf_04589
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
    
 0.991
Avbf_16754
Transcription initiation factor TFIID subunit 12.
    
 0.990
Avbf_16934
Transcription initiation factor TFIID subunit 12.
    
 0.990
Your Current Organism:
Armadillidium vulgare
NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.