STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avbf_01940Transcription elongation factor B polypeptide 2. (122 aa)    
Predicted Functional Partners:
Avbf_14380
Cullin-2; Belongs to the cullin family.
    
 0.997
Avbf_01053
Cullin-5; Belongs to the cullin family.
    
 0.996
Avbf_00481
RING-box protein 1.
   
 0.996
Avbf_14517
RING-box protein 2.
   
 0.993
Avbf_13840
UBX domain-containing protein 2.
    
 0.992
Avbf_09435
Suppressor of cytokine signaling 6.
    
 0.991
Avbf_16899
Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
   
 0.990
Avbf_09710
Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
   
 0.990
Avbf_00449
HIF-1a_CTAD domain-containing protein.
    
 0.990
Avbf_13145
Leucine-rich repeat protein 1.
    
 0.989
Your Current Organism:
Armadillidium vulgare
NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug
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