STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avbf_01141E3 ubiquitin-protein ligase TRAIP. (90 aa)    
Predicted Functional Partners:
Avbf_00790
Microtubule-associated protein RP/EB family member 1.
    
   0.729
Avbf_03180
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
    
   0.699
Avbf_00794
Ubiquitin-like modifier-activating enzyme 5.
     
 0.654
Avbf_18874
TNF receptor-associated factor 3.
    
 
 0.553
Avbf_10569
Slo-interacting protein 1.
    
 
 0.553
Avbf_00943
E3 ubiquitin-protein ligase PDZRN3.
    
 
 0.553
Avbf_04313
TNF receptor-associated factor 4.
    
 
 0.553
Avbf_02639
E3 ubiquitin-protein ligase NRDP1.
    
 
 0.553
Avbf_14499
Fanconi anemia group D2 protein.
   
 
 0.539
Avbf_13145
Leucine-rich repeat protein 1.
   
 
 0.527
Your Current Organism:
Armadillidium vulgare
NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug
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