STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avbf_01298E3 ubiquitin-protein ligase RFWD2. (647 aa)    
Predicted Functional Partners:
Avbf_00108
DET1-like protein.
    
 0.990
Avbf_14270
DNA damage-binding protein 1.
    
 0.940
Avbf_06783
DNA damage-binding protein 1.
    
 0.940
Avbf_06784
Pre-mRNA-splicing factor rse1.
    
 0.940
Avbf_06782
Uncharacterized protein.
    
 0.937
Avbf_01970
DNA damage-binding protein 2.
    
 0.935
Avbf_03818
Cullin-4A; Belongs to the cullin family.
    
 0.935
Avbf_03817
Cullin-4B; Belongs to the cullin family.
    
 0.935
Avbf_11365
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.921
Avbf_05005
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.921
Your Current Organism:
Armadillidium vulgare
NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.