Avbf_01655 protein (Armadillidium vulgare) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Avbf_01655

TAF5-like RNA polymerase II factor-associated factor 65 kDa subunit 5L. (478 aa)

Predicted Functional Partners:

Avbf_11547

0.998

Avbf_04856

0.998

Avbf_02133

0.998

Avbf_06601

0.998

Avbf_05088

0.998

Avbf_05198

0.998

Avbf_05274

0.998

Avbf_01286

0.996

Avbf_06395

0.995

Avbf_08535

0.994

Your Current Organism:

Armadillidium vulgare

NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Avbf_01286	Avbf_01655	A0A444TPY5	A0A444TR85	Transcriptional adapter 3.	TAF5-like RNA polymerase II factor-associated factor 65 kDa subunit 5L.	0.996
Avbf_01286	Avbf_05088	A0A444TPY5	A0A444TB92	Transcriptional adapter 3.	Transcription initiation factor TFIID subunit 9.	0.998
Avbf_01286	Avbf_05198	A0A444TPY5	A0A444TDN8	Transcriptional adapter 3.	Transcription initiation factor TFIID subunit 6.	0.996
Avbf_01286	Avbf_08535	A0A444TPY5	A0A444T8N8	Transcriptional adapter 3.	Ubiquitin carboxyl-terminal hydrolase.	0.995
Avbf_01286	Avbf_11547	A0A444TPY5	A0A444SGX5	Transcriptional adapter 3.	TATA-box-binding protein.	0.970
Avbf_01655	Avbf_01286	A0A444TR85	A0A444TPY5	TAF5-like RNA polymerase II factor-associated factor 65 kDa subunit 5L.	Transcriptional adapter 3.	0.996
Avbf_01655	Avbf_02133	A0A444TR85	A0A444SRB9	TAF5-like RNA polymerase II factor-associated factor 65 kDa subunit 5L.	Transcription initiation factor TFIID subunit 13.	0.998
Avbf_01655	Avbf_04856	A0A444TR85	A0A444SKM4	TAF5-like RNA polymerase II factor-associated factor 65 kDa subunit 5L.	Transcription initiation factor TFIID subunit 8.	0.998
Avbf_01655	Avbf_05088	A0A444TR85	A0A444TB92	TAF5-like RNA polymerase II factor-associated factor 65 kDa subunit 5L.	Transcription initiation factor TFIID subunit 9.	0.998
Avbf_01655	Avbf_05198	A0A444TR85	A0A444TDN8	TAF5-like RNA polymerase II factor-associated factor 65 kDa subunit 5L.	Transcription initiation factor TFIID subunit 6.	0.998
Avbf_01655	Avbf_05274	A0A444TR85	A0A444TGX2	TAF5-like RNA polymerase II factor-associated factor 65 kDa subunit 5L.	Transcription initiation factor TFIID subunit 2.	0.998
Avbf_01655	Avbf_06395	A0A444TR85	A0A444SHW6	TAF5-like RNA polymerase II factor-associated factor 65 kDa subunit 5L.	Transcription initiation factor TFIID subunit 3.	0.995
Avbf_01655	Avbf_06601	A0A444TR85	A0A444SS82	TAF5-like RNA polymerase II factor-associated factor 65 kDa subunit 5L.	Transcription initiation factor TFIID subunit 11.	0.998
Avbf_01655	Avbf_08535	A0A444TR85	A0A444T8N8	TAF5-like RNA polymerase II factor-associated factor 65 kDa subunit 5L.	Ubiquitin carboxyl-terminal hydrolase.	0.994
Avbf_01655	Avbf_11547	A0A444TR85	A0A444SGX5	TAF5-like RNA polymerase II factor-associated factor 65 kDa subunit 5L.	TATA-box-binding protein.	0.998
Avbf_02133	Avbf_01655	A0A444SRB9	A0A444TR85	Transcription initiation factor TFIID subunit 13.	TAF5-like RNA polymerase II factor-associated factor 65 kDa subunit 5L.	0.998
Avbf_02133	Avbf_04856	A0A444SRB9	A0A444SKM4	Transcription initiation factor TFIID subunit 13.	Transcription initiation factor TFIID subunit 8.	0.998
Avbf_02133	Avbf_05088	A0A444SRB9	A0A444TB92	Transcription initiation factor TFIID subunit 13.	Transcription initiation factor TFIID subunit 9.	0.998
Avbf_02133	Avbf_05198	A0A444SRB9	A0A444TDN8	Transcription initiation factor TFIID subunit 13.	Transcription initiation factor TFIID subunit 6.	0.998
Avbf_02133	Avbf_05274	A0A444SRB9	A0A444TGX2	Transcription initiation factor TFIID subunit 13.	Transcription initiation factor TFIID subunit 2.	0.998