Avbf_13050 protein (Armadillidium vulgare) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Avbf_13050

Upstream stimulatory factor 2. (334 aa)

Predicted Functional Partners:

Avbf_07593

0.787

Avbf_02233

0.787

Avbf_05897

0.641

Avbf_00316

0.622

Avbf_00317

0.622

Avbf_00918

0.464

Avbf_04945

0.410

Your Current Organism:

Armadillidium vulgare

NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Avbf_00316	Avbf_00317	A0A444TS06	A0A444TS90	Putative ATP-citrate synthase subunit 2.	ATP-citrate synthase.	0.951
Avbf_00316	Avbf_00918	A0A444TS06	A0A444TQH5	Putative ATP-citrate synthase subunit 2.	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; ATP-specific succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	0.434
Avbf_00316	Avbf_13050	A0A444TS06	A0A444TRB7	Putative ATP-citrate synthase subunit 2.	Upstream stimulatory factor 2.	0.622
Avbf_00317	Avbf_00316	A0A444TS90	A0A444TS06	ATP-citrate synthase.	Putative ATP-citrate synthase subunit 2.	0.951
Avbf_00317	Avbf_00918	A0A444TS90	A0A444TQH5	ATP-citrate synthase.	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; ATP-specific succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	0.434
Avbf_00317	Avbf_13050	A0A444TS90	A0A444TRB7	ATP-citrate synthase.	Upstream stimulatory factor 2.	0.622
Avbf_00918	Avbf_00316	A0A444TQH5	A0A444TS06	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; ATP-specific succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	Putative ATP-citrate synthase subunit 2.	0.434
Avbf_00918	Avbf_00317	A0A444TQH5	A0A444TS90	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; ATP-specific succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	ATP-citrate synthase.	0.434
Avbf_00918	Avbf_13050	A0A444TQH5	A0A444TRB7	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; ATP-specific succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	Upstream stimulatory factor 2.	0.464
Avbf_02233	Avbf_07593	A0A444TE58	A0A444TAW4	14-3-3 protein epsilon; Belongs to the 14-3-3 family.	14-3-3 protein zeta; Belongs to the 14-3-3 family.	0.957
Avbf_02233	Avbf_13050	A0A444TE58	A0A444TRB7	14-3-3 protein epsilon; Belongs to the 14-3-3 family.	Upstream stimulatory factor 2.	0.787
Avbf_04945	Avbf_13050	A0A444TRG3	A0A444TRB7	Sterol regulatory element-binding protein 1.	Upstream stimulatory factor 2.	0.410
Avbf_05897	Avbf_13050	A0A444SP12	A0A444TRB7	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase subunit.	Upstream stimulatory factor 2.	0.641
Avbf_07593	Avbf_02233	A0A444TAW4	A0A444TE58	14-3-3 protein zeta; Belongs to the 14-3-3 family.	14-3-3 protein epsilon; Belongs to the 14-3-3 family.	0.957
Avbf_07593	Avbf_13050	A0A444TAW4	A0A444TRB7	14-3-3 protein zeta; Belongs to the 14-3-3 family.	Upstream stimulatory factor 2.	0.787
Avbf_13050	Avbf_00316	A0A444TRB7	A0A444TS06	Upstream stimulatory factor 2.	Putative ATP-citrate synthase subunit 2.	0.622
Avbf_13050	Avbf_00317	A0A444TRB7	A0A444TS90	Upstream stimulatory factor 2.	ATP-citrate synthase.	0.622
Avbf_13050	Avbf_00918	A0A444TRB7	A0A444TQH5	Upstream stimulatory factor 2.	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; ATP-specific succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	0.464
Avbf_13050	Avbf_02233	A0A444TRB7	A0A444TE58	Upstream stimulatory factor 2.	14-3-3 protein epsilon; Belongs to the 14-3-3 family.	0.787
Avbf_13050	Avbf_04945	A0A444TRB7	A0A444TRG3	Upstream stimulatory factor 2.	Sterol regulatory element-binding protein 1.	0.410