Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Avbf_03000 | Avbf_04242 | A0A444TQ03 | A0A444SVY4 | Heterogeneous nuclear ribonucleoprotein K. | U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. | 0.918 |
Avbf_03000 | Avbf_04312 | A0A444TQ03 | A0A444TFA2 | Heterogeneous nuclear ribonucleoprotein K. | Aly/REF export factor 2. | 0.560 |
Avbf_03000 | Avbf_04448 | A0A444TQ03 | A0A444SYK2 | Heterogeneous nuclear ribonucleoprotein K. | Serine/arginine-rich splicing factor 2. | 0.849 |
Avbf_03000 | Avbf_05787 | A0A444TQ03 | A0A444SW24 | Heterogeneous nuclear ribonucleoprotein K. | Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. | 0.653 |
Avbf_03000 | Avbf_07148 | A0A444TQ03 | A0A444TS34 | Heterogeneous nuclear ribonucleoprotein K. | Myelin expression factor 2. | 0.968 |
Avbf_03000 | Avbf_07487 | A0A444TQ03 | A0A444SUL2 | Heterogeneous nuclear ribonucleoprotein K. | RNA-binding protein 1. | 0.791 |
Avbf_03000 | Avbf_07688 | A0A444TQ03 | A0A444TMA9 | Heterogeneous nuclear ribonucleoprotein K. | Small nuclear ribonucleoprotein G. | 0.687 |
Avbf_03000 | Avbf_08199 | A0A444TQ03 | A0A444T320 | Heterogeneous nuclear ribonucleoprotein K. | Small nuclear ribonucleoprotein Sm D2. | 0.691 |
Avbf_03000 | Avbf_11209 | A0A444TQ03 | A0A444SXL8 | Heterogeneous nuclear ribonucleoprotein K. | Small nuclear ribonucleoprotein Sm D3. | 0.701 |
Avbf_03000 | Avbf_16053 | A0A444TQ03 | A0A444SS84 | Heterogeneous nuclear ribonucleoprotein K. | Small nuclear ribonucleoprotein F; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. | 0.660 |
Avbf_04242 | Avbf_03000 | A0A444SVY4 | A0A444TQ03 | U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. | Heterogeneous nuclear ribonucleoprotein K. | 0.918 |
Avbf_04242 | Avbf_04312 | A0A444SVY4 | A0A444TFA2 | U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. | Aly/REF export factor 2. | 0.983 |
Avbf_04242 | Avbf_04448 | A0A444SVY4 | A0A444SYK2 | U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. | Serine/arginine-rich splicing factor 2. | 0.938 |
Avbf_04242 | Avbf_05787 | A0A444SVY4 | A0A444SW24 | U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. | Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. | 0.994 |
Avbf_04242 | Avbf_07148 | A0A444SVY4 | A0A444TS34 | U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. | Myelin expression factor 2. | 0.966 |
Avbf_04242 | Avbf_07487 | A0A444SVY4 | A0A444SUL2 | U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. | RNA-binding protein 1. | 0.974 |
Avbf_04242 | Avbf_07688 | A0A444SVY4 | A0A444TMA9 | U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. | Small nuclear ribonucleoprotein G. | 0.992 |
Avbf_04242 | Avbf_08199 | A0A444SVY4 | A0A444T320 | U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. | Small nuclear ribonucleoprotein Sm D2. | 0.994 |
Avbf_04242 | Avbf_11209 | A0A444SVY4 | A0A444SXL8 | U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. | Small nuclear ribonucleoprotein Sm D3. | 0.807 |
Avbf_04242 | Avbf_16053 | A0A444SVY4 | A0A444SS84 | U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. | Small nuclear ribonucleoprotein F; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. | 0.994 |
page 1 of 6