Avbf_00473 protein (Armadillidium vulgare) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Avbf_00473

Discs large-like protein 1-like protein. (1115 aa)

Predicted Functional Partners:

Avbf_01761

0.984

Avbf_16511

0.931

Avbf_05403

0.931

Avbf_02373

0.923

Avbf_02372

0.923

Avbf_01986

0.921

Avbf_01845

0.919

Avbf_11209

0.912

Avbf_05787

0.909

Avbf_08199

0.909

Your Current Organism:

Armadillidium vulgare

NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Avbf_00473	Avbf_01761	A0A444TT68	A0A444TRC2	Discs large-like protein 1-like protein.	Adhesion G protein-coupled receptor L1; Belongs to the G-protein coupled receptor 2 family.	0.984
Avbf_00473	Avbf_01845	A0A444TT68	A0A444TDW9	Discs large-like protein 1-like protein.	CAVP-target protein.	0.919
Avbf_00473	Avbf_01986	A0A444TT68	A0A444TV19	Discs large-like protein 1-like protein.	Calcium/calmodulin-dependent protein kinase type II alpha chain.	0.921
Avbf_00473	Avbf_02372	A0A444TT68	A0A444TRW6	Discs large-like protein 1-like protein.	Protein lap4.	0.923
Avbf_00473	Avbf_02373	A0A444TT68	A0A444TRW0	Discs large-like protein 1-like protein.	Disks large 1 tumor suppressor protein; Belongs to the MAGUK family.	0.923
Avbf_00473	Avbf_05403	A0A444TT68	A0A444TLP8	Discs large-like protein 1-like protein.	Ras-related protein M-Ras.	0.931
Avbf_00473	Avbf_05787	A0A444TT68	A0A444SW24	Discs large-like protein 1-like protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.909
Avbf_00473	Avbf_08199	A0A444TT68	A0A444T320	Discs large-like protein 1-like protein.	Small nuclear ribonucleoprotein Sm D2.	0.909
Avbf_00473	Avbf_11209	A0A444TT68	A0A444SXL8	Discs large-like protein 1-like protein.	Small nuclear ribonucleoprotein Sm D3.	0.912
Avbf_00473	Avbf_16511	A0A444TT68	A0A444SZD3	Discs large-like protein 1-like protein.	GTP-binding protein Rit1.	0.931
Avbf_01761	Avbf_00473	A0A444TRC2	A0A444TT68	Adhesion G protein-coupled receptor L1; Belongs to the G-protein coupled receptor 2 family.	Discs large-like protein 1-like protein.	0.984
Avbf_01845	Avbf_00473	A0A444TDW9	A0A444TT68	CAVP-target protein.	Discs large-like protein 1-like protein.	0.919
Avbf_01845	Avbf_01986	A0A444TDW9	A0A444TV19	CAVP-target protein.	Calcium/calmodulin-dependent protein kinase type II alpha chain.	0.605
Avbf_01845	Avbf_02372	A0A444TDW9	A0A444TRW6	CAVP-target protein.	Protein lap4.	0.587
Avbf_01845	Avbf_02373	A0A444TDW9	A0A444TRW0	CAVP-target protein.	Disks large 1 tumor suppressor protein; Belongs to the MAGUK family.	0.587
Avbf_01845	Avbf_05403	A0A444TDW9	A0A444TLP8	CAVP-target protein.	Ras-related protein M-Ras.	0.957
Avbf_01845	Avbf_16511	A0A444TDW9	A0A444SZD3	CAVP-target protein.	GTP-binding protein Rit1.	0.957
Avbf_01986	Avbf_00473	A0A444TV19	A0A444TT68	Calcium/calmodulin-dependent protein kinase type II alpha chain.	Discs large-like protein 1-like protein.	0.921
Avbf_01986	Avbf_01845	A0A444TV19	A0A444TDW9	Calcium/calmodulin-dependent protein kinase type II alpha chain.	CAVP-target protein.	0.605
Avbf_01986	Avbf_02372	A0A444TV19	A0A444TRW6	Calcium/calmodulin-dependent protein kinase type II alpha chain.	Protein lap4.	0.940