STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avbf_04580Pre-mRNA-processing factor 6. (909 aa)    
Predicted Functional Partners:
Avbf_03601
Putative U5 small nuclear ribonucleoprotein helicase.
   
 0.998
Avbf_02924
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 0.998
Avbf_03155
Putative ATP-dependent RNA helicase DDX23; Belongs to the DEAD box helicase family.
   
 0.998
Avbf_00198
U5 small nuclear ribonucleoprotein component.
   
 0.998
Avbf_05405
U5 small nuclear ribonucleoprotein 40 kDa protein.
   
 0.998
Avbf_11209
Small nuclear ribonucleoprotein Sm D3.
   
 0.997
Avbf_11060
U4/U6 small nuclear ribonucleoprotein Prp31.
   
 0.997
Avbf_05787
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.996
Avbf_05144
U4/U6 small nuclear ribonucleoprotein Prp4.
   
 0.996
Avbf_02092
U4/U6 small nuclear ribonucleoprotein Prp3.
   
 0.996
Your Current Organism:
Armadillidium vulgare
NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.