STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avbf_10198snRNA-activating protein complex subunit 1. (926 aa)    
Predicted Functional Partners:
Avbf_06948
snRNA-activating protein complex subunit 3.
    
 0.998
Avbf_09808
Transcription initiation factor IIB.
    
 0.982
Avbf_11547
TATA-box-binding protein.
   
 0.979
Avbf_04273
Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.
    
  0.954
Avbf_18314
TATA box-binding protein-like 1.
   
 0.948
Avbf_00586
TATA box-binding protein-like 1.
   
 0.948
Avbf_02722
Transcription factor TFIIIB component B''-like protein.
    
 0.860
Avbf_04691
DNA-directed RNA polymerase II subunit RPB3.
   
 
 0.750
Avbf_01655
TAF5-like RNA polymerase II factor-associated factor 65 kDa subunit 5L.
     
 0.745
Avbf_11767
DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.
   
 
 0.743
Your Current Organism:
Armadillidium vulgare
NCBI taxonomy Id: 13347
Other names: A. vulgare, common pillbug
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