Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
A6J79_09660 | ARC34082.1 | A6J79_09660 | A6J79_06580 | Glucohydrolase; Frameshifted; internal stop; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.599 |
A6J79_09660 | mnmE | A6J79_09660 | A6J79_08215 | Glucohydrolase; Frameshifted; internal stop; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.605 |
ARC34082.1 | A6J79_09660 | A6J79_06580 | A6J79_09660 | Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Glucohydrolase; Frameshifted; internal stop; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.599 |
ARC34082.1 | ARC34083.1 | A6J79_06580 | A6J79_06585 | Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.772 |
ARC34082.1 | ARC34255.1 | A6J79_06580 | A6J79_07545 | Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-entry nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.664 |
ARC34082.1 | lysS | A6J79_06580 | A6J79_06575 | Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | lysine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.500 |
ARC34082.1 | mnmE | A6J79_06580 | A6J79_08215 | Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.592 |
ARC34083.1 | ARC34082.1 | A6J79_06585 | A6J79_06580 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.772 |
ARC34083.1 | lysS | A6J79_06585 | A6J79_06575 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | lysine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.486 |
ARC34255.1 | ARC34082.1 | A6J79_07545 | A6J79_06580 | DNA-entry nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.664 |
lysS | ARC34082.1 | A6J79_06575 | A6J79_06580 | lysine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family. | Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.500 |
lysS | ARC34083.1 | A6J79_06575 | A6J79_06585 | lysine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.486 |
mnmE | A6J79_09660 | A6J79_08215 | A6J79_09660 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | Glucohydrolase; Frameshifted; internal stop; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.605 |
mnmE | ARC34082.1 | A6J79_08215 | A6J79_06580 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.592 |