STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKL17_1003Oligopeptide ABC transporter; Belongs to the binding-protein-dependent transport system permease family. (635 aa)    
Predicted Functional Partners:
AKL17_1005
Peptide ABC transporter.
 0.995
AKL17_1004
Peptide ABC transporter.
  
 0.974
AKL17_2248
Peptide/opine/nickel uptake ABC transporter permease.
  
 0.912
AKL17_1617
Binding-protein-dependent transport systems inner membrane component.
  
 0.885
AKL17_1002
Oligopeptide ABC transporter; Belongs to the ABC transporter superfamily.
 
  
0.880
AKL17_3838
Binding-protein-dependent transporters inner membrane component.
  
 0.876
AKL17_0045
ABC transporter permease protein.
  
 0.861
AKL17_3207
Oligopeptide ABC transporter.
  
 0.859
AKL17_3753
ABC transporter permease protein.
  
 0.857
AKL17_3870
ABC-type transport system permease protein.
  
 0.840
Your Current Organism:
Defluviimonas alba
NCBI taxonomy Id: 1335048
Other names: CGMCC 1.12518, D. alba, Defluviimonas alba Pan et al. 2015, LMG 27406, LMG:27406, Rhodobacter sp. b45, Rhodobacter sp. cai42, strain cai42
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