STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKL17_1351Hypothetical protein. (236 aa)    
Predicted Functional Partners:
AKL17_1350
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
 
     0.863
AKL17_3832
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase.
    
 0.717
AKL17_1352
Aldehyde dehydrogenase.
       0.647
AKL17_1353
Aldehyde dehydrogenase.
       0.647
AKL17_1354
5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
     0.620
AKL17_4684
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase.
    
 0.586
AKL17_1349
GntR family transcriptional regulator.
 
     0.576
AKL17_0080
Metapyrocatechase.
 
   
 0.439
AKL17_0082
Oxidoreductase.
 
     0.403
Your Current Organism:
Defluviimonas alba
NCBI taxonomy Id: 1335048
Other names: CGMCC 1.12518, D. alba, Defluviimonas alba Pan et al. 2015, LMG 27406, LMG:27406, Rhodobacter sp. b45, Rhodobacter sp. cai42, strain cai42
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