STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKL17_1700Family 1 extracellular solute-binding protein. (335 aa)    
Predicted Functional Partners:
AKL17_2424
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.978
AKL17_2207
ABC transporter-related; Belongs to the ABC transporter superfamily.
 
 
 0.946
AKL17_2068
Binding-protein-dependent transport systems inner membrane component.
  
 
 0.906
AKL17_2069
Extracellular solute-binding protein.
     
 0.906
AKL17_3482
ABC transporter permease.
  
 
 0.906
AKL17_3483
Extracellular solute-binding protein.
     
 0.906
AKL17_1871
Iron ABC transporter.
     
 0.905
AKL17_3484
ABC transporter-related protein.
 
 
 0.871
AKL17_2072
ABC transporter protein; Belongs to the ABC transporter superfamily.
  
 
 0.849
AKL17_0561
Putative iron-regulated protein.
 
    0.795
Your Current Organism:
Defluviimonas alba
NCBI taxonomy Id: 1335048
Other names: CGMCC 1.12518, D. alba, Defluviimonas alba Pan et al. 2015, LMG 27406, LMG:27406, Rhodobacter sp. b45, Rhodobacter sp. cai42, strain cai42
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