STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKL17_2320Putative sarcosine oxidase delta subunit protein. (107 aa)    
Predicted Functional Partners:
AKL17_2318
Sarcosine oxidase subunit gamma.
 
 0.999
AKL17_2319
Putative sarcosine oxidase, alpha subunit; Belongs to the GcvT family.
 
 0.999
AKL17_2322
Sarcosine oxidase subunit beta.
 
 0.992
AKL17_0631
Dimethylglycine dehydrogenase; Belongs to the GcvT family.
 
 0.990
AKL17_0242
Sarcosine oxidase, gamma subunit.
 
 0.983
AKL17_1896
FAD dependent oxidoreductase; Belongs to the GcvT family.
 
 0.982
AKL17_3011
Sarcosine oxidase, alpha subunit; Belongs to the GcvT family.
 
 
 0.970
AKL17_3129
Peptidase M24.
  
  
  0.925
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
  
 
  0.912
AKL17_0200
glyA-3.
  
 
  0.906
Your Current Organism:
Defluviimonas alba
NCBI taxonomy Id: 1335048
Other names: CGMCC 1.12518, D. alba, Defluviimonas alba Pan et al. 2015, LMG 27406, LMG:27406, Rhodobacter sp. b45, Rhodobacter sp. cai42, strain cai42
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