STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKL17_2328hydroxymethylglutaryl-CoA lyase. (289 aa)    
Predicted Functional Partners:
AKL17_2327
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.998
AKL17_4453
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.994
AKL17_3524
3-oxoadipate CoA-succinyl transferase, alpha subunit.
  
 
 0.928
AKL17_3525
succinyl-CoA:3-ketoacid-CoA transferase subunit B.
  
 
 0.926
AKL17_0126
Beta-ketothiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.921
AKL17_0161
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.921
AKL17_3096
3-ketoacyl-CoA thiolase/acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.921
AKL17_3399
Beta-ketoadipyl CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.921
AKL17_3427
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.921
AKL17_4662
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.921
Your Current Organism:
Defluviimonas alba
NCBI taxonomy Id: 1335048
Other names: CGMCC 1.12518, D. alba, Defluviimonas alba Pan et al. 2015, LMG 27406, LMG:27406, Rhodobacter sp. b45, Rhodobacter sp. cai42, strain cai42
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