STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKL17_3199ABC transporter, membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family. (342 aa)    
Predicted Functional Partners:
AKL17_3200
Sugar ABC transporter.
 0.997
AKL17_3201
Periplasmic binding protein/LacI transcriptional regulator.
 0.997
AKL17_3198
ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
  
 
0.995
AKL17_2144
ABC transporter, substrate binding protein.
 
 0.983
AKL17_0220
ABC transporter-related.
 
 0.865
AKL17_4786
Carbohydrate binding protein.
 
 
 0.856
rbsA
ABC transporter, nucleotide binding/ATPase protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.839
rbsA-2
Ribose transport ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.827
AKL17_3061
ABC transporter-like protein.
 
 0.819
AKL17_4787
ABC transporter nucleotide binding/ATPase protein.
 
 0.819
Your Current Organism:
Defluviimonas alba
NCBI taxonomy Id: 1335048
Other names: CGMCC 1.12518, D. alba, Defluviimonas alba Pan et al. 2015, LMG 27406, LMG:27406, Rhodobacter sp. b45, Rhodobacter sp. cai42, strain cai42
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