STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKL17_3344ABC sugar transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family. (430 aa)    
Predicted Functional Partners:
AKL17_3343
ABC transporter-like protein.
 
 0.993
AKL17_3345
ABC sugar transporter, periplasmic binding protein.
 
 
 0.991
AKL17_2144
ABC transporter, substrate binding protein.
  
 0.894
AKL17_3346
Xylose operon repressor.
 
     0.861
AKL17_0219
Putative sugar uptake ABC transporter periplasmic solute-binding protein precursor.
  
 0.754
AKL17_0220
ABC transporter-related.
  
 0.748
AKL17_4789
ABC transporter membrane spanning protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.650
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.553
AKL17_4786
Carbohydrate binding protein.
 
  
 0.529
AKL17_3201
Periplasmic binding protein/LacI transcriptional regulator.
  
 0.520
Your Current Organism:
Defluviimonas alba
NCBI taxonomy Id: 1335048
Other names: CGMCC 1.12518, D. alba, Defluviimonas alba Pan et al. 2015, LMG 27406, LMG:27406, Rhodobacter sp. b45, Rhodobacter sp. cai42, strain cai42
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.