STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKL17_3922Type I secretion system ATPase. (149 aa)    
Predicted Functional Partners:
AKL17_3921
Type I secretion system ATPase.
  
 0.992
AKL17_3566
Rhiziobicin secretion.
 
  
  0.984
AKL17_3920
Type I secretion membrane fusion protein, HlyD family.
  
 0.920
AKL17_3413
Lipid ABC transporter ATPase/inner membrane protein.
 
      0.890
AKL17_3997
ABC transporter, nucleotide binding/ATPase protein.
 
    
 0.839
AKL17_3567
Hemolysin D.
  
 0.833
AKL17_0836
ABC transporter-related.
 
      0.832
AKL17_3937
ABC transporter, membrane spanning protein.
  
 0.821
AKL17_0280
Hemolysin-type calcium-binding region, RTX.
 
 
 0.775
AKL17_3924
RTX toxin.
 
 
 0.767
Your Current Organism:
Defluviimonas alba
NCBI taxonomy Id: 1335048
Other names: CGMCC 1.12518, D. alba, Defluviimonas alba Pan et al. 2015, LMG 27406, LMG:27406, Rhodobacter sp. b45, Rhodobacter sp. cai42, strain cai42
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