STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCC34004.1Signal transduction histidine kinase. (659 aa)    
Predicted Functional Partners:
SCC34022.1
Two component transcriptional regulator, LuxR family.
 
  0.979
SCC20884.1
Two component transcriptional regulator, LuxR family.
 
  0.909
SCC43633.1
Two component transcriptional regulator, LuxR family.
 
  0.909
SCC48796.1
Two component transcriptional regulator, LuxR family.
 
  0.909
SCC18422.1
Two component transcriptional regulator, LuxR family.
 
  0.908
SCC53858.1
Two component transcriptional regulator, LuxR family.
 
  0.907
SCC30926.1
Two component transcriptional regulator, LuxR family.
 
  0.906
SCB73175.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
  
  0.883
SCC55117.1
Hypothetical protein.
  
 0.820
SCC21475.1
Signal transduction histidine kinase.
  
 0.818
Your Current Organism:
Chitinophaga costaii
NCBI taxonomy Id: 1335309
Other names: C. costaii, CIP 110584, Chitinophaga costaii Proenca et al. 2014, Chitinophaga sp. A37T2, LMG 27458, LMG:27458, strain A37T2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.