STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znuCZinc ABC transporter, ATP-binding protein; Protein involved in ATP binding and ATPase activity. (225 aa)    
Predicted Functional Partners:
znuB
Zinc ABC transporter, inner membrane permease protein; Protein involved in ATP binding and transport.
 0.999
znuA
Zinc ABC transporter, periplasmic-binding protein; Protein involved in binding; Belongs to the bacterial solute-binding protein 9 family.
 
 0.993
WDC_1437
Hypothetical protein.
 
0.776
mntR
Mn-dependent transcriptional regulator MntR; Protein involved in sequence-specific DNA binding transcription factor activity and iron ion binding.
  
 
 0.766
isdF
Heme transporter IsdDEF, permease component IsdF; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
   
 0.656
WDC_0489
Hypothetical protein.
  
  
  0.609
glmU
N-acetylglucosamine-1-phosphate uridyltransferase / Glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.
       0.542
WDC_0491
ABC transporter, ATP-binding protein.
 
0.519
purR
Transcription regulator associated with purine metabolism, PurR.
       0.511
mntH
Protein involved in transporter activity and transport.
   
  
 0.476
Your Current Organism:
Lactobacillus wasatchensis
NCBI taxonomy Id: 1335616
Other names: DSM 29958, L. wasatchensis, LMG 28678, LMG:28678, Lactobacillus sp. WDC04, Lactobacillus wasatchensis Oberg et al. 2016, strain WDC04
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