STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDC_0407Amino acid ABC transporter, amino acid-binding/permease protein; Belongs to the bacterial solute-binding protein 3 family. (291 aa)    
Predicted Functional Partners:
WDC_0406
Amino acid ABC transporter, amino acid-binding/permease protein.
 0.997
WDC_0135
Amino acid ABC transporter, permease protein.
 
 0.978
WDC_0412
Glutamate transport membrane-spanning protein.
 0.978
WDC_0413
Glutamate transport membrane-spanning protein.
 0.977
WDC_1620
ABC-type amino acid transport system, permease and periplasmic component.
 0.977
WDC_0661
Amino acid ABC transporter, permease protein.
 0.970
WDC_1259
Glutamine ABC transporter, ATP-binding protein.
 
 0.962
glnQ
Glutamine transport ATP-binding protein.
 
 0.959
WDC_0134
ABC-type polar amino acid transport system, ATPase component.
 
 0.935
WDC_0415
Glutamate transport ATP-binding protein.
 
 0.928
Your Current Organism:
Lactobacillus wasatchensis
NCBI taxonomy Id: 1335616
Other names: DSM 29958, L. wasatchensis, LMG 28678, LMG:28678, Lactobacillus sp. WDC04, Lactobacillus wasatchensis Oberg et al. 2016, strain WDC04
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.