STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxaCProtein involved in glucuronate isomerase activity. (481 aa)    
Predicted Functional Partners:
uxuB
D-mannonate oxidoreductase; Protein involved in fructuronate reductase activity.
 
 
 0.929
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.924
WDC_0503
D-tagaturonate epimerase.
 
  
 0.901
lacL
Beta-galactosidase large subunit.
  
 
 0.750
WDC_0508
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
  
 0.557
WDC_0501
Oxidoreductase of aldo/keto reductase family, subgroup 1.
    
  0.535
WDC_1628
Putative lipase/esterase.
 
  
  0.431
WDC_1097
PTS system, N-acetylglucosamine-specific; Protein involved in protein-N(PI)-phosphohistidine-sugar phosphotransferase activity.
      
 0.422
WDC_1835
Hypothetical protein.
  
  
  0.420
rhiN
Rhamnogalacturonides degradation protein.
     
 0.403
Your Current Organism:
Lactobacillus wasatchensis
NCBI taxonomy Id: 1335616
Other names: DSM 29958, L. wasatchensis, LMG 28678, LMG:28678, Lactobacillus sp. WDC04, Lactobacillus wasatchensis Oberg et al. 2016, strain WDC04
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