STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDC_0529Hypothetical protein. (397 aa)    
Predicted Functional Partners:
WDC_0528
Hypothetical protein.
 
    0.953
WDC_0527
Hypothetical protein.
       0.763
tetR
Transcriptional regulator, TetR family.
  
     0.667
WDC_1526
Protein involved in ornithine decarboxylase activity.
   
 
 0.663
WDC_1718
Hypothetical protein.
  
     0.649
WDC_0530
Hypothetical protein.
       0.648
WDC_0767
Hypothetical protein.
  
     0.559
xerD1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.541
WDC_1716
Hypothetical protein.
  
     0.527
WDC_0526
Xanthine/uracil/thiamine/ascorbate permease family protein.
       0.525
Your Current Organism:
Lactobacillus wasatchensis
NCBI taxonomy Id: 1335616
Other names: DSM 29958, L. wasatchensis, LMG 28678, LMG:28678, Lactobacillus sp. WDC04, Lactobacillus wasatchensis Oberg et al. 2016, strain WDC04
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.