STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDC_0586Inner membrane protein. (243 aa)    
Predicted Functional Partners:
WDC_0587
Hypothetical protein.
       0.697
WDC_0577
Hypothetical protein.
  
     0.566
htrA
Serine protease, DegP/HtrA, do-like; Protein involved in serine-type endopeptidase activity, protein binding and proteolysis.
    
 
 0.519
htrA-2
Serine protease HtrA; Protein involved in serine-type endopeptidase activity, protein binding and proteolysis.
    
 
 0.519
WDC_1166
Arylsulfate sulfotransferase.
  
     0.469
pheT
Phenylalanyl-tRNA synthetase beta chain; Protein involved in phenylalanine-tRNA ligase activity; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.439
pip-2
Proline iminopeptidase; Releases the N-terminal proline from various substrates. Belongs to the peptidase S33 family.
       0.436
Your Current Organism:
Lactobacillus wasatchensis
NCBI taxonomy Id: 1335616
Other names: DSM 29958, L. wasatchensis, LMG 28678, LMG:28678, Lactobacillus sp. WDC04, Lactobacillus wasatchensis Oberg et al. 2016, strain WDC04
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