STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsBRibose ABC transport system, periplasmic ribose-binding protein. (315 aa)    
Predicted Functional Partners:
rbsA
Ribose ABC transport system, ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 0.999
rbsC
Ribose ABC transport system, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 0.999
WDC_0298
Two-component system histidine kinase; Protein involved in two-component sensor activity, signal transducer activity, ATP binding and signal transduction.
 
  
 0.996
rbsD
Ribose ABC transport system, high affinity permease; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.987
WDC_0071
Sensor histidine kinase.
 
 
 
  0.908
phoR
Phosphate regulon sensor protein PhoR.
 
 
 
  0.883
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.847
WDC_0976
Two-component sensor kinase SA14-24; Protein involved in signal transducer activity, ATP binding and signal transduction.
 
 
 
  0.843
WDC_1432
Sensor histidine kinase.
 
 
 
  0.795
WDC_0675
Ribose operon repressor.
 
 
 0.745
Your Current Organism:
Lactobacillus wasatchensis
NCBI taxonomy Id: 1335616
Other names: DSM 29958, L. wasatchensis, LMG 28678, LMG:28678, Lactobacillus sp. WDC04, Lactobacillus wasatchensis Oberg et al. 2016, strain WDC04
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.