STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynT2Xyloside transporter. (462 aa)    
Predicted Functional Partners:
WDC_0673
Glycoside hydrolase family 2.
 
    0.806
WDC_0597
Putative oligogalacturonide transporter.
  
     0.770
WDC_0505
Putative transport protein.
  
     0.768
WDC_0672
Glycoside hydrolase family 2.
  
    0.751
WDC_1005
Hypothetical protein.
  
     0.750
WDC_0115
Hypothetical protein.
  
     0.749
xynT1
Xyloside transporter.
 
    
0.543
WDC_0671
Hypothetical protein.
       0.531
WDC_0675
Ribose operon repressor.
 
   
 0.446
Your Current Organism:
Lactobacillus wasatchensis
NCBI taxonomy Id: 1335616
Other names: DSM 29958, L. wasatchensis, LMG 28678, LMG:28678, Lactobacillus sp. WDC04, Lactobacillus wasatchensis Oberg et al. 2016, strain WDC04
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.