STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ykoDDuplicated ATPase component of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine. (468 aa)    
Predicted Functional Partners:
ykoC
Transmembrane component of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine.
 
 0.994
ykoE
Substrate-specific component of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine.
 
    0.973
ecfT
Transmembrane component; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 0.935
bioY
Substrate-specific component BioY of biotin ECF transporter.
   
 0.812
WDC_0518
Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter.
 
 
 
 0.739
pdxU
Substrate-specific component of predicted pyridoxine ECF transporter.
   
 
 0.650
WDC_0731
Hypothetical protein.
 
     0.634
WDC_0736
Transcriptional regulator, xre family.
  
     0.491
WDC_0727
Inosine-uridine preferring nucleoside hydrolase; Protein involved in purine nucleosidase activity.
       0.419
WDC_0535
Hypothetical protein.
  
     0.418
Your Current Organism:
Lactobacillus wasatchensis
NCBI taxonomy Id: 1335616
Other names: DSM 29958, L. wasatchensis, LMG 28678, LMG:28678, Lactobacillus sp. WDC04, Lactobacillus wasatchensis Oberg et al. 2016, strain WDC04
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