STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsFSSU ribosomal protein S6p; Binds together with S18 to 16S ribosomal RNA. (98 aa)    
Predicted Functional Partners:
rpsD
SSU ribosomal protein S4p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.999
rpmE2
LSU ribosomal protein L31p, zinc-independent; Protein involved in structural constituent of ribosome and translation.
  
 
 0.999
rpmI
LSU ribosomal protein L35p; Protein involved in structural constituent of ribosome and translation; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.999
rplT
LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.999
rplU
LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
 
 0.999
rpmA
LSU ribosomal protein L27p; Protein involved in structural constituent of ribosome and translation; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.999
rpsN
SSU ribosomal protein S14p; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
 0.999
rpsB
SSU ribosomal protein S2p; Protein involved in structural constituent of ribosome and translation; Belongs to the universal ribosomal protein uS2 family.
  
 0.999
rpsU
SSU ribosomal protein S21p; Protein involved in structural constituent of ribosome and translation; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.999
rpmB
LSU ribosomal protein L28p; Protein involved in structural constituent of ribosome and translation; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.999
Your Current Organism:
Lactobacillus wasatchensis
NCBI taxonomy Id: 1335616
Other names: DSM 29958, L. wasatchensis, LMG 28678, LMG:28678, Lactobacillus sp. WDC04, Lactobacillus wasatchensis Oberg et al. 2016, strain WDC04
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