STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDC_1087Hypothetical protein. (240 aa)    
Predicted Functional Partners:
WDC_1089
Putative transcriptional regulator.
 
  
 0.920
WDC_1088
Permease of the major facilitator superfamily.
 
    0.879
WDC_0719
Putative transcriptional regulator.
 
    0.691
WDC_1575
Phosphoesterase.
  
     0.672
nrdHI
Glutaredoxin-like protein NrdH; Required for reduction of Ribonucleotide reductase class Ib.
  
     0.653
WDC_1569
Hypothetical protein.
  
     0.628
WDC_1561
Hypothetical protein.
  
     0.609
WDC_1085
Hypothetical protein.
       0.500
WDC_1086
Hypothetical protein.
       0.500
WDC_1013
Hypothetical protein.
  
     0.492
Your Current Organism:
Lactobacillus wasatchensis
NCBI taxonomy Id: 1335616
Other names: DSM 29958, L. wasatchensis, LMG 28678, LMG:28678, Lactobacillus sp. WDC04, Lactobacillus wasatchensis Oberg et al. 2016, strain WDC04
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.