STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDC_1161Lactose and galactose permease, GPH translocator family. (472 aa)    
Predicted Functional Partners:
WDC_1160
Hypothetical protein.
 
     0.916
lacM
Beta-galactosidase small subunit.
 
  
 0.596
WDC_1156
Galactose operon repressor, GalR-LacI family of transcriptional regulators.
 
     0.524
lacL
Beta-galactosidase large subunit.
 
  
 0.499
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.499
WDC_1159
Hypothetical protein.
       0.485
WDC_0719
Putative transcriptional regulator.
  
     0.455
galT
Protein involved in UTP:galactose-1-phosphate uridylyltransferase activity.
 
  
 0.451
WDC_0940
Putative membrane protein.
  
     0.404
Your Current Organism:
Lactobacillus wasatchensis
NCBI taxonomy Id: 1335616
Other names: DSM 29958, L. wasatchensis, LMG 28678, LMG:28678, Lactobacillus sp. WDC04, Lactobacillus wasatchensis Oberg et al. 2016, strain WDC04
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