STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuABGlycine betaine ABC transport system, permease protein OpuAB. (281 aa)    
Predicted Functional Partners:
opuAA
Glycine betaine ABC transport system, ATP-binding protein OpuAA.
 0.999
opuAC
Glycine betaine ABC transport system, glycine betaine-binding protein OpuAC.
 
 0.999
WDC_1253
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
       0.488
opuCC
Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC.
 
 
  
 0.469
proX
L-proline glycine betaine binding ABC transporter protein ProX.
 
 
0.436
Your Current Organism:
Lactobacillus wasatchensis
NCBI taxonomy Id: 1335616
Other names: DSM 29958, L. wasatchensis, LMG 28678, LMG:28678, Lactobacillus sp. WDC04, Lactobacillus wasatchensis Oberg et al. 2016, strain WDC04
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.