STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mntRMn-dependent transcriptional regulator MntR; Protein involved in sequence-specific DNA binding transcription factor activity and iron ion binding. (216 aa)    
Predicted Functional Partners:
znuA
Zinc ABC transporter, periplasmic-binding protein; Protein involved in binding; Belongs to the bacterial solute-binding protein 9 family.
  
 
 0.805
znuB
Zinc ABC transporter, inner membrane permease protein; Protein involved in ATP binding and transport.
  
 
 0.780
czcD
Cobalt-zinc-cadmium resistance protein CzcD.
     
 0.770
znuC
Zinc ABC transporter, ATP-binding protein; Protein involved in ATP binding and ATPase activity.
  
 
 0.766
WDC_0419
Zinc uptake regulation protein ZUR; Protein involved in sequence-specific DNA binding transcription factor activity; Belongs to the Fur family.
  
  
 0.673
perR
Peroxide stress regulator PerR; Protein involved in sequence-specific DNA binding transcription factor activity; Belongs to the Fur family.
  
  
 0.673
metN
Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
    
   0.660
metN-2
Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
    
   0.660
metN-3
Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
    
   0.660
rpoB
DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.606
Your Current Organism:
Lactobacillus wasatchensis
NCBI taxonomy Id: 1335616
Other names: DSM 29958, L. wasatchensis, LMG 28678, LMG:28678, Lactobacillus sp. WDC04, Lactobacillus wasatchensis Oberg et al. 2016, strain WDC04
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