STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDC_1815Voltage-gated chloride channel family protein. (453 aa)    
Predicted Functional Partners:
trkB
Potassium uptake protein, integral membrane component.
  
 
 0.865
cinA
Competence/damage-inducible protein CinA; Belongs to the CinA family.
 
  
 0.792
WDC_1816
Na(+)/H(+) antiporter; Protein involved in sodium ion transport and regulation of pH; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
   
 0.568
WDC_0957
Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
   0.527
WDC_0958
Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
   0.527
WDC_0400
Na(+)/H(+) antiporter; Protein involved in sodium ion transport and regulation of pH.
     
 0.464
WDC_1102
Hypothetical protein.
  
  
 0.429
guaA-2
Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP.
      0.426
groEL
Heat shock protein 60 family chaperone GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
    
 
 0.426
WDC_0605
Calcium-transporting ATPase.
  
 
 0.421
Your Current Organism:
Lactobacillus wasatchensis
NCBI taxonomy Id: 1335616
Other names: DSM 29958, L. wasatchensis, LMG 28678, LMG:28678, Lactobacillus sp. WDC04, Lactobacillus wasatchensis Oberg et al. 2016, strain WDC04
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