STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000526695_00333Unannotated protein. (428 aa)    
Predicted Functional Partners:
GCA_000526695_02276
Unannotated protein.
 
    0.776
GCA_000526695_02275
Unannotated protein.
 
    0.768
GCA_000526695_00991
Unannotated protein.
 
     0.595
GCA_000526695_00334
Unannotated protein.
       0.572
GCA_000526695_00331
Unannotated protein.
  
    0.564
GCA_000526695_00332
Unannotated protein.
  
    0.534
GCA_000526695_02274
Unannotated protein.
 
     0.486
GCA_000526695_02278
Unannotated protein.
 
   
 0.451
GCA_000526695_02150
Unannotated protein.
  
     0.439
GCA_000526695_00269
Unannotated protein.
 
     0.428
Your Current Organism:
Carnimonas nigrificans
NCBI taxonomy Id: 1336245
Other names: C. nigrificans ATCC BAA-78, Carnimonas nigrificans ATCC BAA-78
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.