STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR65952.1Lipopolysaccharide export system permease protein. (341 aa)    
Predicted Functional Partners:
SDS24814.1
Lipopolysaccharide export system ATP-binding protein.
 
 
 0.976
SDS68731.1
ABC-type multidrug transport system, ATPase component.
   
 0.949
SDS39348.1
Lipopolysaccharide export system permease protein.
  
 
 
0.924
SDR65936.1
EamA domain-containing membrane protein RarD.
       0.840
SDS56721.1
LPS assembly outer membrane protein LptD (organic solvent tolerance protein OstA).
 
 
 0.763
tgt
tRNA-guanine transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the [...]
  
  
 0.753
accA
acetyl-CoA carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.
       0.715
SDR71163.1
Beta-barrel assembly machine subunit BamA.
 
     0.673
SDS42552.1
OstA-like protein.
 
 
 0.631
SDS10863.1
Outer membrane protein assembly factor BamA.
 
     0.630
Your Current Organism:
Gillisia sp. Hel133143
NCBI taxonomy Id: 1336796
Other names: G. sp. Hel1_33_143, Gillisia sp. Hel1_33_143
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