STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY28469.1Homogentisate 1,2-dioxygenase. (386 aa)    
Predicted Functional Partners:
SCY28523.1
4-hydroxyphenylpyruvate dioxygenase.
 
 0.995
SCY16283.1
Fumarylacetoacetate hydrolase.
 
 
 0.921
SCY33894.1
methylmalonyl-CoA epimerase.
  
 0.853
SCX91636.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
  
 
 0.727
SCY28492.1
Hypothetical protein.
       0.662
SCX99914.1
Xylose isomerase-like TIM barrel.
     
 0.582
SCY01722.1
4a-hydroxytetrahydrobiopterin dehydratase.
  
  
 0.553
SCY37214.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
 
     0.529
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.512
SCY28444.1
NTE family protein.
  
    0.491
Your Current Organism:
Nonlabens sp. Hel13355
NCBI taxonomy Id: 1336802
Other names: N. sp. Hel1_33_55, Nonlabens sp. Hel1_33_55
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