Groups of genes that are frequently observed in each other's genomic neighborhood.
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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A448YKQ6
DEKNAAC102730. (159 aa)
Predicted Functional Partners:
A0A448YGZ9
DEKNAAC101007.
0.529
A0A448YNQ7
DEKNAAC103695.
0.473
A0A448YRW7
DEKNAAC104834.
0.415
A0A448YTK3
DEKNAAC105387.
0.415
Your Current Organism:
Brettanomyces naardenensis
NCBI taxonomy Id: 13370 Other names: ATCC 22075, B. naardenensis, CBS 6042, CCRC 21520, CCRC:21520, DBVPG 6712, Dekkera naardenensis, NRRL Y-17526